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    Results: 1 to 20 of 26

    1.

    Segment-based multiple sequence alignment.

    Rausch T, Emde AK, Weese D, Döring A, Notredame C, Reinert K.

    Bioinformatics. 2008 Aug 15;24(16):i187-92.PMID: 18689823 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    R-Coffee: a web server for accurately aligning noncoding RNA sequences.

    Moretti S, Wilm A, Higgins DG, Xenarios I, Notredame C.

    Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W10-3. Epub 2008 May 15.PMID: 18483080 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    Computing multiple sequence/structure alignments with the T-coffee package.

    Notredame C, Suhre K.

    Curr Protoc Bioinformatics. 2004 Feb;Chapter 3:Unit3.8.PMID: 18428722 [PubMed - indexed for MEDLINE]Related articles

    4.

    R-Coffee: a method for multiple alignment of non-coding RNA.

    Wilm A, Higgins DG, Notredame C.

    Nucleic Acids Res. 2008 May;36(9):e52. Epub 2008 Apr 17.PMID: 18420654 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    Vertebrate conserved non coding DNA regions have a high persistence length and a short persistence time.

    Retelska D, Beaudoing E, Notredame C, Jongeneel CV, Bucher P.

    BMC Genomics. 2007 Oct 31;8:398.PMID: 17973996 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    Recent evolutions of multiple sequence alignment algorithms.

    Notredame C.

    PLoS Comput Biol. 2007 Aug;3(8):e123. Review. No abstract available. PMID: 17784778 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods.

    Moretti S, Armougom F, Wallace IM, Higgins DG, Jongeneel CV, Notredame C.

    Nucleic Acids Res. 2007 Jul;35(Web Server issue):W645-8. Epub 2007 May 25.PMID: 17526519 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    APDB: a web server to evaluate the accuracy of sequence alignments using structural information.

    Armougom F, Poirot O, Moretti S, Higgins DG, Bucher P, Keduas V, Notredame C.

    Bioinformatics. 2006 Oct 1;22(19):2439-40.PMID: 17032685 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    The iRMSD: a local measure of sequence alignment accuracy using structural information.

    Armougom F, Moretti S, Keduas V, Notredame C.

    Bioinformatics. 2006 Jul 15;22(14):e35-9.PMID: 16873492 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee.

    Armougom F, Moretti S, Poirot O, Audic S, Dumas P, Schaeli B, Keduas V, Notredame C.

    Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W604-8.PMID: 16845081 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    PROTOGENE: turning amino acid alignments into bona fide CDS nucleotide alignments.

    Moretti S, Reinier F, Poirot O, Armougom F, Audic S, Keduas V, Notredame C.

    Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W600-3.PMID: 16845080 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    M-Coffee: combining multiple sequence alignment methods with T-Coffee.

    Wallace IM, O'Sullivan O, Higgins DG, Notredame C.

    Nucleic Acids Res. 2006 Mar 23;34(6):1692-9. Print 2006.PMID: 16556910 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    CaspR: a web server for automated molecular replacement using homology modelling.

    Claude JB, Suhre K, Notredame C, Claverie JM, Abergel C.

    Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W606-9.PMID: 15215460 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    3DCoffee@igs: a web server for combining sequences and structures into a multiple sequence alignment.

    Poirot O, Suhre K, Abergel C, O'Toole E, Notredame C.

    Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W37-40.PMID: 15215345 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    3DCoffee: combining protein sequences and structures within multiple sequence alignments.

    O'Sullivan O, Suhre K, Abergel C, Higgins DG, Notredame C.

    J Mol Biol. 2004 Jul 2;340(2):385-95.PMID: 15201059 [PubMed - indexed for MEDLINE]Related articles

    16.

    Structural genomics of highly conserved microbial genes of unknown function in search of new antibacterial targets.

    Abergel C, Coutard B, Byrne D, Chenivesse S, Claude JB, Deregnaucourt C, Fricaux T, Gianesini-Boutreux C, Jeudy S, Lebrun R, Maza C, Notredame C, Poirot O, Suhre K, Varagnol M, Claverie JM.

    J Struct Funct Genomics. 2003;4(2-3):141-57.PMID: 14649299 [PubMed - indexed for MEDLINE]Related articles

    17.

    APDB: a novel measure for benchmarking sequence alignment methods without reference alignments.

    O'Sullivan O, Zehnder M, Higgins D, Bucher P, Grosdidier A, Notredame C.

    Bioinformatics. 2003;19 Suppl 1:i215-21.PMID: 12855461 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    Tcoffee@igs: A web server for computing, evaluating and combining multiple sequence alignments.

    Poirot O, O'Toole E, Notredame C.

    Nucleic Acids Res. 2003 Jul 1;31(13):3503-6.PMID: 12824354 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    Recent progress in multiple sequence alignment: a survey.

    Notredame C.

    Pharmacogenomics. 2002 Jan;3(1):131-44. Review.PMID: 11966409 [PubMed - indexed for MEDLINE]Related articles

    20.

    Mocca: semi-automatic method for domain hunting.

    Notredame C.

    Bioinformatics. 2001 Apr;17(4):373-4.PMID: 11301309 [PubMed - indexed for MEDLINE]Related articlesFree article

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