A new regulatory circuit in ribosomal protein operons: S2-mediated control of the rpsB-tsf expression in vivo

RNA. 2008 Sep;14(9):1882-94. doi: 10.1261/rna.1099108. Epub 2008 Jul 22.

Abstract

Autogenous regulation is a general strategy of balancing ribosomal protein synthesis in bacteria. Control mechanisms have been studied in detail for most of ribosomal protein operons, except for rpsB-tsf encoding essential r-protein S2 and elongation factor Ts, where even the promoter has remained unknown. By using single-copy translational fusions with the chromosomal lacZ gene and Western-blot analysis, we demonstrate here that S2 serves as a negative regulator of both rpsB and tsf expression in vivo, acting at a single target within the rpsB 5'-untranslated region (5'-UTR). As determined by primer extension, transcription of the Escherichia coli rpsB-tsf operon starts 162 nucleotides upstream of the rpsB initiation codon at a single promoter TGTGGTATAAA belonging to the extended -10 promoter class. Both the promoter signature and the 5'-UTR structure of the rpsB gene appear to be highly conserved in gamma-proteobacteria. Deletion analysis of the rpsB 5'-UTR within rpsB'-'lacZ fusions has revealed that an operator region involved in the S2 autoregulation comprises conserved structural elements located upstream of the rpsB ribosome binding site. The S2-mediated autogenous control is impaired in rpsB mutants and, more surprisingly, in the rpsA mutant producing decreased amounts of truncated r-protein S1 (rpsAIS10), indicating that S2 might act as a repressor in cooperation with S1.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 5' Untranslated Regions / chemistry
  • 5' Untranslated Regions / genetics
  • Base Sequence
  • Escherichia coli / genetics*
  • Escherichia coli Proteins / genetics*
  • Feedback, Physiological
  • Gene Expression Regulation, Bacterial*
  • Molecular Sequence Data
  • Mutation
  • Operon*
  • Peptide Elongation Factors / genetics*
  • Phylogeny
  • Promoter Regions, Genetic
  • Protein Biosynthesis / genetics
  • Ribosomal Proteins / genetics
  • Ribosomal Proteins / metabolism*
  • Transcription Initiation Site
  • beta-Galactosidase / genetics

Substances

  • 5' Untranslated Regions
  • Escherichia coli Proteins
  • Peptide Elongation Factors
  • Ribosomal Proteins
  • elongation factor Ts
  • ribosomal protein S1
  • ribosomal protein S2
  • beta-Galactosidase