Comp Funct Genomics. 2005;6(1-2):67-71.

Ontology-based interactive information extraction from scientific abstracts.

Milward D, Bjäreland M, Hayes W, Maxwell M, Oberg L, Tilford N, Thomas J, Hale R, Knight S, Barnes J.

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Linguamatics Ltd, St. John's Innovation Centre, Cambridge CB4 0WS, UK. david.milward@linguamatics.com

Abstract

Over recent years, there has been a growing interest in extracting information automatically or semi-automatically from the scientific literature. This paper describes a novel ontology-based interactive information extraction (OBIIE) framework and a specific OBIIE system. We describe how this system enables life scientists to make ad hoc queries similar to using a standard search engine, but where the results are obtained in a database format similar to a pre-programmed information extraction engine. We present a case study in which the system was evaluated for extracting co-factors from EMBASE and MEDLINE.

PMID:: 18629299; [PubMed]
PMCID:: PMC2448603

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