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Genome Biol. 2008;9(6):R96. doi: 10.1186/gb-2008-9-6-r96. Epub 2008 Jun 12.

Anni 2.0: a multipurpose text-mining tool for the life sciences.

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  • 1Department of Medical Informatics, Erasmus MC University Medical Center, Dr, Molewaterplein, Rotterdam, 3015 GE, The Netherlands. r.jelier@erasmusmc.nl.


Anni 2.0 is an online tool (http://biosemantics.org/anni/) to aid the biomedical researcher with a broad range of information needs. Anni provides an ontology-based interface to MEDLINE and retrieves documents and associations for several classes of biomedical concepts, including genes, drugs and diseases, with established text-mining technology. In this article we illustrate Anni's usability by applying the tool to two use cases: interpretation of a set of differentially expressed genes, and literature-based knowledge discovery.

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