Genetic inactivation of p110β in mice. (A) Schematic representation of genomic DNA, mRNA, and protein primary structure of the p110βflox and p110βΔ21,22 locus. Exons 22 and 23 of Pik3cb were flanked by loxP sites as described in Fig. S1, creating a floxed p110β allele that is further referred to as p110βflox. Exon 22 encodes the DFG domain and activation loop that are critical for p110β kinase activity. Constitutive deletion of exons 21 and 22 in mice was achieved by intercrossing p110βflox/flox mice with Cre deleter mice, creating the p110βΔ21,22 allele. The loxP sites were positioned in such a way that, after treatment with Cre, the locus is expected to give rise to mRNA in which exon 20 is spliced in-frame onto exon 23, now encoding an internally truncated p110β protein lacking amino acids 886–975 in the catalytic domain. This p110βΔ21,22 protein is predicted to be kinase-inactive, with a ≈10-kDa reduction in Mr relative to the WT p110β protein and to retain reactivity with antisera raised against the extreme C terminus of p110β. (Left) Exon sequences are represented by filled black rectangles, and intron sequences are indicated by a horizontal black line. The loxP sites are shown as hatched triangles with the pointed end indicating orientation. (Center) Exon boundaries are represented from exons 16 to 24. The positions of the primers used for PCR screening are designated by arrows together with the expected amplification products and their size (bp). (Right) Schematic representation and predicted Mr of WT and mutant p110β proteins, based on exon boundaries from exons 16 to 24. (B) Effect of p110β deletion on in vitro lipid kinase activity. Homogenates of the indicated MEFs were immunoprecipitated by using p110β Abs or absorbed onto PDGF receptor phosphoTyr peptide (pY peptide) immobilized to Sepharose (which binds all class IA PI3K regulatory subunits), followed by in vitro lipid kinase assay with or without 100 nM TGX-155. The level of p110β and p85 in the indicated cell fractions was verified by immunoblotting (data not shown). (C) Effect of p110β deletion on PI3K isoform expression. (Left) Analysis of p110β protein expression in MEFs from p110βflox/flox, p110βflox/Δ21,22, and p110βΔ21,22/Δ21,22 mice by Western blotting. Immunoblot signal intensities obtained with Abs to p110α, p110β, and p85 were expressed relative to signals obtained with antibodies to α-tubulin for at least three different embryos and expressed relative to the signals in p110βflox/flox MEFs. Quantification of the signals detected by the sc-602 p110β Abs revealed that only the intensity of the upper band is decreased upon Cre treatment, whereas the intensity of the lower band is unaffected. p110α expression was not affected in each genotype. p110γ and p110δ were hardly detectable in fibroblasts and could not be reliably quantified. (Right) Total cell lysates or pY-peptide pull-downs were immunoblotted by using the indicated Abs. In NIH 3T3 cells and MEFs (but not in BMMs), the anti-p110β Abs used for Western blotting (sc-602) recognize a nonspecific protein just below the specific p110β signal, indicated as lower band (aspecific) and upper band (p110β), respectively. It is only the upper band that disappears upon p110β deletion.