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    Mamm Genome. 2008 Aug;19(7-8):581-6. Epub 2008 May 13.

    PiRNA-like RNAs in the marsupial Monodelphis domestica identify transcription clusters and likely marsupial transposon targets.

    Devor EJ, Huang L, Samollow PB.

    Molecular Genetics and Biophysics, Integrated DNA Technologies, 1710 Commercial Park, Coralville, IA 52241, USA. rdevor@idtdna.com

    PIWI-interacting RNAs (piRNAs) are a recently discovered class of small noncoding RNAs that have been detected in human, mouse, rat, zebrafish, and Drosophila genomes. We have utilized a size-directed small-RNA cloning procedure to clone and map more than 300 candidate piRNA-like small RNAs in the genome of the marsupial species Monodelphis domestica. Our results are consistent with those from other species in that the piRNA-like candidate sequences range in size from 28 to 31 nucleotides, show a pronounced preference for uridine at the 5' end, are transcribed from a few large clusters, appear to target transposons, and display virtually no sequence conservation.

    PMID: 18473137 [PubMed - indexed for MEDLINE]

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