Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W75-8. Epub 2008 Apr 25.

Software.ncrna.org: web servers for analyses of RNA sequences.

Asai K, Kiryu H, Hamada M, Tabei Y, Sato K, Matsui H, Sakakibara Y, Terai G, Mituyama T.

Source

Department of Computational Biology, Graduate School of Frontier Sciences, University of Tokyo, 5-1-5 Kashiwa-no-ha, Chiba 277-8561, Japan.

Abstract

We present web servers for analysis of non-coding RNA sequences on the basis of their secondary structures. Software tools for structural multiple sequence alignments, structural pairwise sequence alignments and structural motif findings are available from the integrated web server and the individual stand-alone web servers. The servers are located at http://software.ncrna.org, along with the information for the evaluation and downloading. This website is freely available to all users and there is no login requirement.

PMID:: 18440970; [PubMed - indexed for MEDLINE]
PMCID:: PMC2447773

Free PMC Article

Publication Types, MeSH Terms, Substances

Publication Types

Research Support, Non-U.S. Gov't

MeSH Terms

Substances

RNA, Untranslated

LinkOut - more resources

Full Text Sources

Supplemental Content

Save items

Related citations in PubMed

R-Coffee: a web server for accurately aligning noncoding RNA sequences. [Nucleic Acids Res. 2008]
R-Coffee: a web server for accurately aligning noncoding RNA sequences.
Moretti S, Wilm A, Higgins DG, Xenarios I, Notredame C. Nucleic Acids Res. 2008 Jul 1; 36(Web Server issue):W10-3. Epub 2008 May 15.
CENTROIDFOLD: a web server for RNA secondary structure prediction. [Nucleic Acids Res. 2009]
CENTROIDFOLD: a web server for RNA secondary structure prediction.
Sato K, Hamada M, Asai K, Mituyama T. Nucleic Acids Res. 2009 Jul; 37(Web Server issue):W277-80. Epub 2009 May 12.
R-Coffee: a method for multiple alignment of non-coding RNA. [Nucleic Acids Res. 2008]
R-Coffee: a method for multiple alignment of non-coding RNA.
Wilm A, Higgins DG, Notredame C. Nucleic Acids Res. 2008 May; 36(9):e52. Epub 2008 Apr 17.
Review Customized strategies for discovering distant ncRNA homologs. [Brief Funct Genomic Proteomic....]
Review Customized strategies for discovering distant ncRNA homologs.
Mosig A, Zhu L, Stadler PF. Brief Funct Genomic Proteomic. 2009 Nov; 8(6):451-60. Epub 2009 Sep 24.
Review Nucleic acid sequence and structure databases. [Methods Mol Biol. 2010]
Review Nucleic acid sequence and structure databases.
Washietl S, Hofacker IL. Methods Mol Biol. 2010; 609:3-15.

See reviews... See all...

Related information

Related Citations
Calculated set of PubMed citations closely related to the selected article(s) retrieved using a word weight algorithm. Related articles are displayed in ranked order from most to least relevant, with the “linked from” citation displayed first.
References for this PMC Article
Citation referenced in PubMed article. Only valid for PubMed citations that are also in PMC.
Free in PMC
Free full text articles in PMC

Recent activity

Clear Turn Off Turn On

Software.ncrna.org: web servers for analyses of RNA sequences.
Software.ncrna.org: web servers for analyses of RNA sequences.
Nucleic Acids Res. 2008 Jul 1 ;36(Web Server issue):W75-8. Epub 2008 Apr 25 .

PubMed
Evaluation of rotation thrombelastography for the diagnosis of hyperfibrinolysis...
Evaluation of rotation thrombelastography for the diagnosis of hyperfibrinolysis in trauma patients.
Br J Anaesth. 2008 Jun ;100(6):792-7. Epub 2008 Apr 24 .

PubMed
High-volume FES-cycling partially reverses bone loss in people with chronic spin...
High-volume FES-cycling partially reverses bone loss in people with chronic spinal cord injury.
Bone. 2008 Jul ;43(1):169-76. Epub 2008 Mar 20 .

PubMed
Biphosphonates for the therapy of complex regional pain syndrome I--systematic r...
Biphosphonates for the therapy of complex regional pain syndrome I--systematic review.
Eur J Pain. 2009 Jan ;13(1):17-21. Epub 2008 Apr 28 .

PubMed
The role of community-based nurses in harm reduction for HIV prevention: a South...
The role of community-based nurses in harm reduction for HIV prevention: a South East and South Asia case study.
Int J Drug Policy. 2008 Jun ;19(3):211-3. Epub 2008 Apr 28 .

PubMed

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

PubMed

Result Filters

Display Settings:

Send to: