The Vienna RNA websuite. [Nucleic Acids Res. 2008]

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1: Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W70-4. Epub 2008 Apr 19. Links

The Vienna RNA websuite.

Gruber AR, Lorenz R, Bernhart SH, Neuböck R, Hofacker IL.

Institute for Theoretical Chemistry, University of Vienna, Währingerstrasse 17, 1090 Wien, Austria.

The Vienna RNA Websuite is a comprehensive collection of tools for folding, design and analysis of RNA sequences. It provides a web interface to the most commonly used programs of the Vienna RNA package. Among them, we find folding of single and aligned sequences, prediction of RNA-RNA interactions, and design of sequences with a given structure. Additionally, we provide analysis of folding landscapes using the barriers program and structural RNA alignments using LocARNA. The web server together with software packages for download is freely accessible at http://rna.tbi.univie.ac.at/.

PMID: 18424795 [PubMed - indexed for MEDLINE]

PMCID: PMC2447809

Vienna RNA secondary structure server.
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[Nucleic Acids Res. 2003]
The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search.
Nucleic Acids Res. 2005 Jul 1; 33(Web Server issue):W650-3.

[Nucleic Acids Res. 2005]
RADAR: a web server for RNA data analysis and research.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W300-4. Epub 2007 May 21.

[Nucleic Acids Res. 2007]
ReviewBeyond Mfold: recent advances in RNA bioinformatics.
J Biotechnol. 2006 Jun 25; 124(1):41-55. Epub 2006 Mar 10.

[J Biotechnol. 2006]
ReviewAn overview of RNA structure prediction and applications to RNA gene prediction and RNAi design.
Curr Protoc Bioinformatics. 2006 Mar; Chapter 12:Unit 12.1.

[Curr Protoc Bioinformatics. 2006]
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[Proc Natl Acad Sci U S A. 2009]

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