J Biomol NMR. 1991 Sep;1(3):217-36.

A relational database for sequence-specific protein NMR data.

Seavey BR, Farr EA, Westler WM, Markley JL.

Source

Biochemistry Department, College of Agricultural and Life Sciences, University of Wisconsin-Madison 53706-1569.

Abstract

A protein NMR database has been designed and is being implemented. The database is intended to contain solution NMR results from proteins and peptides (larger than 12 residues). A relational database format has been chosen that indexes data by: primary journal citation, molecular species, sequence-related and atom-specific assignments, and experimental conditions. At present, all data are entered from the primary refereed literature. Examples are given of sample queries to the database. Possible distribution formats are discussed.

PMID:: 1841696; [PubMed - indexed for MEDLINE]

Publication Types, MeSH Terms, Substances, Grant Support

Publication Types

MeSH Terms

Substances

Grant Support

LinkOut - more resources

Full Text Sources

EBSCO

Other Literature Sources

COS Scholar Universe

Supplemental Content

Save items

Related citations in PubMed

Review NMR spectroscopy of peptides and proteins. Practical considerations. [Mol Biotechnol. 1997]
Review NMR spectroscopy of peptides and proteins. Practical considerations.
Hinds MG, Norton RS. Mol Biotechnol. 1997 Jun; 7(3):315-31.
Comparing atomistic simulation data with the NMR experiment: how much can NOEs actually tell us? [Proteins. 2006]
Comparing atomistic simulation data with the NMR experiment: how much can NOEs actually tell us?
Zagrovic B, van Gunsteren WF. Proteins. 2006 Apr 1; 63(1):210-8.
Refinement of NMR-determined protein structures with database derived distance constraints. [J Bioinform Comput Biol. 2005]
Refinement of NMR-determined protein structures with database derived distance constraints.
Cui F, Jernigan R, Wu Z. J Bioinform Comput Biol. 2005 Dec; 3(6):1315-29.
Review Introduction to the NMR of proteins. [Methods Mol Biol. 1997]
Review Introduction to the NMR of proteins.
Reid DG, MacLachlan LK, Edwards AJ, Hubbard JA, Sweeney PJ. Methods Mol Biol. 1997; 60:1-28.
Reconsidering complete search algorithms for protein backbone NMR assignment. [Bioinformatics. 2005]
Reconsidering complete search algorithms for protein backbone NMR assignment.
Vitek O, Bailey-Kellogg C, Craig B, Kuliniewicz P, Vitek J. Bioinformatics. 2005 Sep 1; 21 Suppl 2:ii230-6.

See reviews... See all...

Cited by 43 PubMed Central articles

MetaboHunter: an automatic approach for identification of metabolites from 1H-NMR spectra of complex mixtures. [BMC Bioinformatics. 2011]
MetaboHunter: an automatic approach for identification of metabolites from 1H-NMR spectra of complex mixtures.
Tulpan D, Léger S, Belliveau L, Culf A, Cuperlović-Culf M. BMC Bioinformatics. 2011 Oct 14; 12:400. Epub 2011 Oct 14.
SHIFTX2: significantly improved protein chemical shift prediction. [J Biomol NMR. 2011]
SHIFTX2: significantly improved protein chemical shift prediction.
Han B, Liu Y, Ginzinger SW, Wishart DS. J Biomol NMR. 2011 May; 50(1):43-57. Epub 2011 Mar 30.
Hyperfine-shifted 13C resonance assignments in an iron-sulfur protein with quantum chemical verification: aliphatic C-H···S 3-center-4-electron interactions. [J Am Chem Soc. 2011]
Hyperfine-shifted 13C resonance assignments in an iron-sulfur protein with quantum chemical verification: aliphatic C-H···S 3-center-4-electron interactions.
Westler WM, Lin IJ, Perczel A, Weinhold F, Markley JL. J Am Chem Soc. 2011 Feb 9; 133(5):1310-6. Epub 2011 Jan 5.

See all...

Related information

Related Citations
Calculated set of PubMed citations closely related to the selected article(s) retrieved using a word weight algorithm. Related articles are displayed in ranked order from most to least relevant, with the “linked from” citation displayed first.
Substance (MeSH Keyword)
PubChem chemical substance (submitted) records that are classified under the same Medical Subject Headings (MeSH) controlled vocabulary as the current articles.
Cited in PMC
Full-text articles in the PubMed Central Database that cite the current articles.

Recent activity

Clear Turn Off Turn On

A relational database for sequence-specific protein NMR data.
A relational database for sequence-specific protein NMR data.
J Biomol NMR. 1991 Sep ;1(3):217-36.

PubMed
Breast cancer screening programme as setting for an adjunct research project: ef...
Breast cancer screening programme as setting for an adjunct research project: effect on programme attendance.
J Med Screen. 2008 ;15(1):44-5.

PubMed
The increasing burden of alcoholic liver disease on United Kingdom critical care...
The increasing burden of alcoholic liver disease on United Kingdom critical care units: secondary analysis of a high quality clinical database.
J Health Serv Res Policy. 2008 Apr ;13 Suppl 2:40-4.

PubMed
Brown-Vialetto-Van Laere syndrome.
Brown-Vialetto-Van Laere syndrome.
Orphanet J Rare Dis. 2008 Apr 17 ;3:9.

PubMed
Two-dimensional electrophoretic comparison of metastatic and non-metastatic huma...
Two-dimensional electrophoretic comparison of metastatic and non-metastatic human breast tumors using in vitro cultured epithelial cells derived from the cancer tissues.
BMC Cancer. 2008 Apr 16 ;8:107.

PubMed

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

PubMed

Result Filters

Display Settings:

Send to: