Analysis of the transcription factor profile of Pitx3-eGFP knock-in (KI) mouse blastocyst-derived embryonic stem (mES) cells during in vitro differentiation showed that eGFP+ cells were of a midbrain dopamine neuron phenotype. Pitx3 is expressed in dopamine neurons of the VTA and the SN, as visualized by staining of the naïve mouse brain (A). Pitx3 is also expressed in mES cell culture during in vitro differentiation, as visualized by eGFP expression in Pitx3-eGFP KI mES cells (B, D), and this expression overlapped with TH immunoreactivity (C). Hoechst staining showed that the majority of the cells in the mES cell culture were not midbrain dopamine neurons (D). eGFP expression in mES cells, driven by the Pitx3 allele, showed high overlapping expression with Pitx3 (99.4%) (E–H and U) ([H] is an orthogonal view of [G]), Nurr1 (100%) (I–L and U) ([L] is an orthogonal view of [K]), En (96.2%) (M–P and U) ([P] is an orthogonal view of [O]), and Lmx1a (88.1%) (Q–T) ([T] is an orthogonal view of [S]). All analyses were performed on cells in stage 5:8 of the differentiation protocol. Scale bars = 50 µm (bars in [D, G, K, O, S] applies to [B, C, E, F, I, J, M, N, Q, R]). Abbreviations: eGFP, enhanced green fluorescent protein; En, engrailed; SN, substantia nigra; TH, tyrosine hydroxylase; VTA, ventral tegmental area.