My NCBISign In

Display Settings:

Format

Send to:

Choose Destination
    BMC Genomics. 2008 Mar 20;9:133.

    A software framework for microarray and gene expression object model (MAGE-OM) array design annotation.

    Qureshi M, Ivens A.

    Source

    Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK. matloob@gmail.com

    Abstract

    BACKGROUND:

    The MIAME and MAGE-OM standards defined by the MGED society provide a specification and implementation of a software infrastructure to facilitate the submission and sharing of data from microarray studies via public repositories. However, although the MAGE object model is flexible enough to support different annotation strategies, the annotation of array descriptions can be complex.

    RESULTS:

    We have developed a graphical Java-based application (Adamant) to assist with submission of Microarray designs to public repositories. Output of the application is fully compliant with the standards prescribed by the various public data repositories.

    CONCLUSION:

    Adamant will allow researchers to annotate and submit their own array designs to public repositories without requiring programming expertise, knowledge of the MAGE-OM or XML. The application has been used to submit a number of ArrayDesigns to the Array Express database.

    PMID:
    18366695
    [PubMed - indexed for MEDLINE]
    PMCID:
    PMC2358904
    Free PMC Article

    Images from this publication.See all images (4) Free text

    Figure 2
    Figure 4
    Figure 1
    Figure 3

    Publication Types, MeSH Terms, Grant Support

    Publication Types

    MeSH Terms

    Grant Support

    LinkOut - more resources

    Full Text Sources

    Other Literature Sources

      Supplemental Content

      Icon for BioMed Central Icon for PubMed Central

      Save items

      loading

      Related citations in PubMed

      See reviews... See all...

      Related information

      • Related Citations
        Calculated set of PubMed citations closely related to the selected article(s) retrieved using a word weight algorithm. Related articles are displayed in ranked order from most to least relevant, with the “linked from” citation displayed first.
      • References for this PMC Article
        Citation referenced in PubMed article. Only valid for PubMed citations that are also in PMC.
      • Free in PMC
        Free full text articles in PMC

      Recent activity

      Clear Turn Off Turn On

      Your browsing activity is empty.

      Activity recording is turned off.

      Turn recording back on

      See more...
      You are here: NCBI > Literature > PubMed
      Write to the Help Desk