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J Mol Biol. 2008 Apr 11;377(5):1460-73. doi: 10.1016/j.jmb.2008.01.096. Epub 2008 Feb 12.

Crystal structure and RNA binding of the Tex protein from Pseudomonas aeruginosa.

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  • 1Department of Chemistry and Biochemistry, Utah State University, Logan, UT 84322-0300, USA.

Abstract

Tex is a highly conserved bacterial protein that likely functions in a variety of transcriptional processes. Here, we describe two crystal structures of the 86-kDa Tex protein from Pseudomonas aeruginosa at 2.3 and 2.5 A resolution, respectively. These structures reveal a relatively flat and elongated protein, with several potential nucleic acid binding motifs clustered at one end, including an S1 domain near the C-terminus that displays considerable structural flexibility. Tex binds nucleic acids, with a preference for single-stranded RNA, and the Tex S1 domain is required for this binding activity. Point mutants further demonstrate that the primary nucleic acid binding site corresponds to a surface of the S1 domain. Sequence alignment and modeling indicate that the eukaryotic Spt6 transcription factor adopts a similar core structure. Structural analysis further suggests that the RNA polymerase and nucleosome interacting regions of Spt6 flank opposite sides of the Tex-like scaffold. Therefore, the Tex structure may represent a conserved scaffold that binds single-stranded RNA to regulate transcription in both eukaryotic and prokaryotic organisms.

PMID:
18321528
[PubMed - indexed for MEDLINE]
PMCID:
PMC2680229
Free PMC Article
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