Trends Biochem Sci. 2008 Mar;33(3):101-3. Epub 2008 Feb 13.

iPath: interactive exploration of biochemical pathways and networks.

Letunic I, Yamada T, Kanehisa M, Bork P.

Source

EMBL, Meyerhofstrasse 1, Heidelberg, Germany.

Abstract

iPath is an open-access online tool (http://pathways.embl.de) for visualizing and analyzing metabolic pathways. An interactive viewer provides straightforward navigation through various pathways and enables easy access to the underlying chemicals and enzymes. Customized pathway maps can be generated and annotated using various external data. For example, by merging human genome data with two important gut commensals, iPath can pinpoint the complementarity of the host-symbiont metabolic capacities.

PMID:: 18276143; [PubMed - indexed for MEDLINE]

Publication Types, MeSH Terms

Publication Types

Letter

MeSH Terms

LinkOut - more resources

Full Text Sources

Supplemental Content

Related citations

iPath2.0: interactive pathway explorer. [Nucleic Acids Res. 2011]
iPath2.0: interactive pathway explorer.
Yamada T, Letunic I, Okuda S, Kanehisa M, Bork P. Nucleic Acids Res. 2011 Jul; 39(Web Server issue):W412-5. Epub 2011 May 5.
NemaPath: online exploration of KEGG-based metabolic pathways for nematodes. [BMC Genomics. 2008]
NemaPath: online exploration of KEGG-based metabolic pathways for nematodes.
Wylie T, Martin J, Abubucker S, Yin Y, Messina D, Wang Z, McCarter JP, Mitreva M. BMC Genomics. 2008 Nov 4; 9:525. Epub 2008 Nov 4.
SMART 6: recent updates and new developments. [Nucleic Acids Res. 2009]
SMART 6: recent updates and new developments.
Letunic I, Doerks T, Bork P. Nucleic Acids Res. 2009 Jan; 37(Database issue):D229-32. Epub 2008 Oct 31.
Review Biological Network Inference and analysis using SEBINI and CABIN. [Methods Mol Biol. 2009]
Review Biological Network Inference and analysis using SEBINI and CABIN.
Taylor R, Singhal M. Methods Mol Biol. 2009; 541:551-76.
Review Systems biology approaches and pathway tools for investigating cardiovascular disease. [Mol Biosyst. 2009]
Review Systems biology approaches and pathway tools for investigating cardiovascular disease.
Wheelock CE, Wheelock AM, Kawashima S, Diez D, Kanehisa M, van Erk M, Kleemann R, Haeggström JZ, Goto S. Mol Biosyst. 2009 Jun; 5(6):588-602. Epub 2009 Apr 27.

See reviews... See all...

Cited by 19 PubMed Central articles

Comparative metaproteomics and diversity analysis of human intestinal microbiota testifies for its temporal stability and expression of core functions. [PLoS One. 2012]
Comparative metaproteomics and diversity analysis of human intestinal microbiota testifies for its temporal stability and expression of core functions.
Kolmeder CA, de Been M, Nikkilä J, Ritamo I, Mättö J, Valmu L, Salojärvi J, Palva A, Salonen A, de Vos WM. PLoS One. 2012; 7(1):e29913. Epub 2012 Jan 18.
Evidence of cellulose metabolism by the giant panda gut microbiome. [Proc Natl Acad Sci U S A. 2011]
Evidence of cellulose metabolism by the giant panda gut microbiome.
Zhu L, Wu Q, Dai J, Zhang S, Wei F. Proc Natl Acad Sci U S A. 2011 Oct 25; 108(43):17714-9. Epub 2011 Oct 17.
GLAMM: Genome-Linked Application for Metabolic Maps. [Nucleic Acids Res. 2011]
GLAMM: Genome-Linked Application for Metabolic Maps.
Bates JT, Chivian D, Arkin AP. Nucleic Acids Res. 2011 Jul; 39(Web Server issue):W400-5. Epub 2011 May 29.

See all...

Related information

Related Citations
Calculated set of PubMed citations closely related to the selected article(s) retrieved using a word weight algorithm. Related articles are displayed in ranked order from most to least relevant, with the “linked from” citation displayed first.
Cited in PMC
Full-text articles in the PubMed Central Database that cite the current articles.

Recent activity

Clear Turn Off Turn On

iPath: interactive exploration of biochemical pathways and networks.
iPath: interactive exploration of biochemical pathways and networks.
Trends Biochem Sci. 2008 Mar ;33(3):101-3. Epub 2008 Feb 13 .

PubMed
Identification of in vitro metabolites of JWH-015, an aminoalkylindole agonist f...
Identification of in vitro metabolites of JWH-015, an aminoalkylindole agonist for the peripheral cannabinoid receptor (CB2) by HPLC-MS/MS.
Anal Bioanal Chem. 2006 Nov ;386(5):1345-55. Epub 2006 Sep 6 .

PubMed
Influenza vaccination in patients on long-term anticoagulant therapy.
Influenza vaccination in patients on long-term anticoagulant therapy.
Vaccine. 2006 Nov 10 ;24(44-46):6624-8. Epub 2006 Jun 8 .

PubMed
Safety of intramuscular influenza vaccine in patients receiving oral anticoagula...
Safety of intramuscular influenza vaccine in patients receiving oral anticoagulation therapy: a single blinded multi-centre randomized controlled clinical trial.
BMC Blood Disord. 2008 May 29 ;8:1.

PubMed
A general method applicable to the search for similarities in the amino acid seq...
A general method applicable to the search for similarities in the amino acid sequence of two proteins.
J Mol Biol. 1970 Mar ;48(3):443-53.

PubMed

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

PubMed

Display Settings:

Send to:

iPath: interactive exploration of biochemical pathways and networks.

Source

Abstract

Publication Types, MeSH Terms

Publication Types

MeSH Terms

LinkOut - more resources

Full Text Sources

Supplemental Content

Related citations

Cited by 19 PubMed Central articles

Related information

Recent activity

Simple NCBI Directory

Getting Started

Resources

Popular

Featured

NCBI Information