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Quantitative methods for genome-scale analysis of in situ hybridization and correlation with microarray data.
Lee CK,
Sunkin SM,
Kuan C,
Thompson CL,
Pathak S,
Ng L,
Lau C,
Fischer S,
Mortrud M,
Slaughterbeck C,
Jones A,
Lein E,
Hawrylycz M.
Allen Institute for Brain Science, N, 34th Street, Seattle, WA 98103, USA. mikeh@alleninstitute.org.
ABSTRACT: With the emergence of genome-wide colorimetric in situ hybridization (ISH) data sets such as the Allen Brain Atlas, it is important to understand the relationship between this gene expression modality and those derived from more quantitative based technologies. This study introduces a novel method for standardized relative quantification of colorimetric ISH signal that enables a large-scale cross-platform expression level comparison of ISH with two publicly available microarray brain data sources.
PMID: 18234097 [PubMed - as supplied by publisher]
PMCID: PMC2395252
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