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FEBS J. 2008 Jan;275(1):163-71. Epub 2007 Dec 6.

Identification of rice TUBBY-like genes and their evolution.

Author information

  • School of Agriculture and Food Science, Zhejiang Forestry University, Hangzhou, Lin'an, China. liuqp@genomics.org.cn

Abstract

The identification of TUBBY-like genes in organisms ranging from single-celled to multicellular eukaryotes has allowed the phylogenetic history of this gene family to be traced back to the early evolutionary stages of eukaryote development. Rice TUBBY-like genes were located on chromosomes 1, 2, 3, 4, 5, 7, 8, 11 and 12 without any obvious clustering. On a genomic scale, it was revealed that the rice TUBBY-like gene family probably evolved mainly through segmental duplication produced by polyploidy. The altered selective constraints (or site-specific rate changes), related to functional divergence during protein evolution between plant and animal TUBBY-like genes, were statistically significant. Based on posterior probability analysis, five amino acid sites (103, 312, 315, 317 and 319) are thought to be responsible for functional divergence.

PMID:
18070109
[PubMed - indexed for MEDLINE]
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