Biophysical characterization of lipid-induced protofibrils. (A) DLS spectra of mature Aβ42 fibrils (A1), fibril/lipid mixtures (A2) and pure liposome preparations (A3, DOPC). Apparent hydrodynamic radii are indicated on the x axis (logarithmic scale), the y axis shows the evolution of the signal during the experiment (20 s) and the color code indicates a relative intensity scale between 0 and 1. The liposome spectrum (A3, 2.5 mg ml−1 lipid concentration) reveals strong monodispersity in the sample with an average hydrodynamic radius just above 100 nm, whereas the amyloid fibril sample (A1, 50 μM peptide concentration) contains a wider range of molecular sizes, ranging from 5 to 100 μm approximately. The spectrum of the amyloid–lipid mixture (A2, 50 μM peptide concentration and 2.5 mg ml−1 lipid concentration) shows a complete loss of signal for hydrodynamic radii above 5 μm. The majority of the signal shows strong heterogeneity with sizes ranging from 100 nm and 1 μm, consistent with the disassembly of amyloid fibrils into smaller species. (B) Far UV CD spectroscopy gives information on the secondary structure of material in solution. The spectra of Aβ42 amyloid fibrils in isolation (50 μM) and in the presence of liposomes (2.5 mg ml−1) containing DMPG display a marked increase in the intensity of the spectrum around 220 nm, while the overall shape of the spectrum is constant. This is consistent with an increase in the amount of soluble material rich in β-sheet content. Similar results were obtained with other lipids (not shown). (C) FTIR yields information on the secondary structure of both the soluble and insoluble material in the sample. The spectra of mature Aβ42 fibrils (50 μM) and fibril/lipid mixtures (BTE, 2.5 mg ml−1) show a strong cross-β signal at 1623 cm−1, consistent with a comparable β-sheet content for amyloid fibrils and protofibrils. However, the difference spectrum reveals an additional band at 1647, corresponding to the formation of random coil in the amyloid/lipid mixture, consistent with partial fibril disassembly. (D) SEC on a GEHealthcare S75/HR10 column of ‘forward' (blue line) and lipid-induced (‘backward') oligomers (green line). For each sample, 200 μl of an amyloid–lipid mixture containing 250 μg of Aβ42 peptide and 2.5 mg ml−1 lipid were injected. Notice peak elutions at 15.8 ml and 16.9 ml, respectively. Upon 0.1% SDS treatment, backward oligomers elute at the same position as forward oligomers, whereas lipids elute in the void volume (black line). For comparison, an elution trace for monomeric Aβ42 is also shown (red line, elution peak at 21 ml). Elution profiles of amyloid fibril samples show no noticeable peaks. Inset show immunostaining of the lipid fraction and the Aβ42/lipid-induced oligomer fraction of the black profile using the antibody A11, which specifically detects oligomers, and the 6E10 mAb, which is specific for Aβ. (E) Eighteen-angles SLS, placed inline with the SEC system, allows to determine molecular mass in an absolute manner that does not depend on interactions with column matrix (as is the case in SEC) or assumed molecular shape (as is the case in DLS). The 15.8 ml peak shown in Figure 3D was analyzed in this manner. The Zimm plot (see Materials and methods) in Figure 3E shows the clear nonlinear dependence of the light scattering intensity with scattering angle, consistent with a radius of gyration larger than 80 nm. The red curve indicates a fit to a quadratic equation (R-squared value >0.9). The molecular masses obtained in this manner vary throughout the peak, in agreement with the heterogeneity observed in DLS and electron microscopy and consistent with a total loss of size-sorting effects from the column due to nonspecific matrix interactions. Masses obtained vary from 80 to 500 kDa throughout the peak.