Fractionation of traffic components by differential centrifugation of SH-SY5Y homogenates. SH-SY5Y cells were lysed and homogenates prepared before fractionation by differential centrifugation, to generate P1 and P2 pellets and supernatant, S2, as described under Materials and Methods. Equal amounts of protein (15 μg) were resolved by SDS-PAGE and analyzed by immunoblotting with the antibodies indicated on the left of each panel. (A) The distribution of endogenous APP splice variants (APP770 and APP695), Mint 1-3, Fe65, and mannose 6-phosphate receptors (CI-M6PR) is shown. (B) The fractionation of organelle markers for medial-Golgi (GM130), trans-Golgi network (TGN38), endoplasmic reticulum (KDELR), plasma membrane (Na+/K+-ATPase), recycling endosomes (TfR), early endosomes (EEA1), and lysosomes (cathepsin D) in these same fractions is shown. (C) The distribution of vesicle coat proteins AP-1, AP-2, and AP-3 (as determined by immunoblotting with antisera specific to γ-adaptin, α-adaptin, and δ-adaptin, respectively), GGA1-3, β-COP (a component of COPI), clathrin, and the regulatory GTPases Arf3 and Rab6 are shown.