Nucleic Acids Res. 2008 Jan;36(Database issue):D719-23. Epub 2007 Oct 11.

Gallus GBrowse: a unified genomic database for the chicken.

Schmidt CJ, Romanov M, Ryder O, Magrini V, Hickenbotham M, Glasscock J, McGrath S, Mardis E, Stein LD.

Source

Department of Animal and Food Sciences, University of Delaware, Newark, DE 19706, USA. schmidtc@udel.edu

Abstract

Gallus GBrowse (http://birdbase.net/cgi-bin/gbrowse/gallus/) provides online access to genomic and other information about the chicken, Gallus gallus. The information provided by this resource includes predicted genes and Gene Ontology (GO) terms, links to Gallus In Situ Hybridization Analysis (GEISHA), Unigene and Reactome, the genomic positions of chicken genetic markers, SNPs and microarray probes, and mappings from turkey, condor and zebra finch DNA and EST sequences to the chicken genome. We also provide a BLAT server (http://birdbase.net/cgi-bin/webBlat) for matching user-provided sequences to the chicken genome. These tools make the Gallus GBrowse server a valuable resource for researchers seeking genomic information regarding the chicken and other avian species.

PMID:: 17933775; [PubMed - indexed for MEDLINE]
PMCID:: PMC2238981

Free PMC Article

Images from this publication.See all images (2)Free text

Publication Types, MeSH Terms, Substances

Publication Types

Research Support, Non-U.S. Gov't

MeSH Terms

Substances

Genetic Markers

LinkOut - more resources

Full Text Sources

Other Literature Sources

Miscellaneous

NCI CPTC Antibody Characterization Program

Supplemental Content

Save items

PubReader: Say goodbye to the old way of reading articles.

Related citations in PubMed

NemaPath: online exploration of KEGG-based metabolic pathways for nematodes. [BMC Genomics. 2008]
NemaPath: online exploration of KEGG-based metabolic pathways for nematodes.
Wylie T, Martin J, Abubucker S, Yin Y, Messina D, Wang Z, McCarter JP, Mitreva M. BMC Genomics. 2008 Nov 4; 9:525. Epub 2008 Nov 4.
ChickVD: a sequence variation database for the chicken genome. [Nucleic Acids Res. 2005]
ChickVD: a sequence variation database for the chicken genome.
Wang J, He X, Ruan J, Dai M, Chen J, Zhang Y, Hu Y, Ye C, Li S, Cong L, et al. Nucleic Acids Res. 2005 Jan 1; 33(Database issue):D438-41.
ESTree db: a tool for peach functional genomics. [BMC Bioinformatics. 2005]
ESTree db: a tool for peach functional genomics.
Lazzari B, Caprera A, Vecchietti A, Stella A, Milanesi L, Pozzi C. BMC Bioinformatics. 2005 Dec 1; 6 Suppl 4:S16. Epub 2005 Dec 1.
Review FlyBase : a database for the Drosophila research community. [Methods Mol Biol. 2008]
Review FlyBase : a database for the Drosophila research community.
Drysdale R, FlyBase Consortium. Methods Mol Biol. 2008; 420:45-59.
Review Chicken genomics charts a path to the genome sequence. [Brief Funct Genomic Proteomic....]
Review Chicken genomics charts a path to the genome sequence.
Burt DW. Brief Funct Genomic Proteomic. 2004 Apr; 3(1):60-7.

See reviews... See all...

Cited by 2 PubMed Central articles

Shewregdb: database and visualization environment for experimental and predicted regulatory information in Shewanella oneidensis mr-1. [Bioinformation. 2009]
Shewregdb: database and visualization environment for experimental and predicted regulatory information in Shewanella oneidensis mr-1.
Syed MH, Karpinets TV, Leuze MR, Kora GH, Romine MR, Uberbacher EC. Bioinformation. 2009 Oct 15; 4(4):169-72. Epub 2009 Oct 15.
The value of avian genomics to the conservation of wildlife. [BMC Genomics. 2009]
The value of avian genomics to the conservation of wildlife.
Romanov MN, Tuttle EM, Houck ML, Modi WS, Chemnick LG, Korody ML, Mork EM, Otten CA, Renner T, Jones KC, et al. BMC Genomics. 2009 Jul 14; 10 Suppl 2:S10. Epub 2009 Jul 14.

Related information

Related Citations
Calculated set of PubMed citations closely related to the selected article(s) retrieved using a word weight algorithm. Related articles are displayed in ranked order from most to least relevant, with the “linked from” citation displayed first.
References for this PMC Article
Citation referenced in PubMed article. Only valid for PubMed citations that are also in PMC.
Free in PMC
Free full text articles in PMC
Cited in PMC
Full-text articles in the PubMed Central Database that cite the current articles.

Recent activity

Clear Turn Off Turn On

Gallus GBrowse: a unified genomic database for the chicken.
Gallus GBrowse: a unified genomic database for the chicken.
Nucleic Acids Res. 2008 Jan ;36(Database issue):D719-23. Epub 2007 Oct 11 .

PubMed

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

PubMed

Result Filters

Display Settings:

Send to: