Swiss PDB Viewer was used to model changes at position 386 on the V4 region of the YU2 gp120-CD4-17b CD4i Ab crystal structure (1G9N) (Kwong et al., 1998) (A, B) or the HXB2 gp120-mAb b12 crystal structure (2NY7) (Zhou et al., 2007) (C, D). Blue, gp120. Yellow, CD4. Green, 17b CD4i Ab (A, B) or mAb b12 (C, D). Orange, position 386. White, carbohydrate moieties. (A) Location of N386 in the YU2 crystal structure. Position 386 is ~12Å from the CD4 binding site. (B) The N-acetylglucosamine (NAG) attached to N386 was aligned with NAG1 from a high mannose group (Man9GlcNAc2) derived from the crystal structure of mAb 2G12 bound to its carbohydrate epitope (1OP5) (Calarese et al., 2003) to produce a model of gp120 with intact glycosylation at position 386. (C) N386 and the attached NAG make contacts with W100 of mAb b12. (D) Swiss PDB Viewer was used to model an N386D change in HXB2, which results in elimination of the NAG but retains the conformation of the b12 W100 and Env amino acid 386 side chains.