Molecular biology. Site-seeing by sequencing. [Science. 2007] - PubMed

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Genome-wide mapping of in vivo protein-DNA interactions. [Science. 2007]
Genome-wide mapping of in vivo protein-DNA interactions.
Johnson DS, Mortazavi A, Myers RM, Wold B. Science. 2007 Jun 8; 316(5830):1497-502. Epub 2007 May 31.
Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data. [Nucleic Acids Res. 2008]
Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data.
Jothi R, Cuddapah S, Barski A, Cui K, Zhao K. Nucleic Acids Res. 2008 Sep; 36(16):5221-31. Epub 2008 Aug 6.
An improved cloning strategy for chromatin-immunoprecipitation-derived DNA fragments. [Anal Biochem. 2006]
An improved cloning strategy for chromatin-immunoprecipitation-derived DNA fragments.
Huang JM, Kim JD, Kim H, Kim J. Anal Biochem. 2006 Sep 1; 356(1):145-7. Epub 2006 Apr 18.
Review Genome-wide identification of binding sites for the nitric oxide-sensitive transcriptional regulator NsrR. [Methods Enzymol. 2008]
Review Genome-wide identification of binding sites for the nitric oxide-sensitive transcriptional regulator NsrR.
Efromovich S, Grainger D, Bodenmiller D, Spiro S. Methods Enzymol. 2008; 437:211-33.
Review Accuracy and reproducibility of protein-DNA microarray technology. [Adv Biochem Eng Biotechnol. 2007]
Review Accuracy and reproducibility of protein-DNA microarray technology.
Field S, Udalova I, Ragoussis J. Adv Biochem Eng Biotechnol. 2007; 104:87-110.

Comparative study on ChIP-seq data: normalization and binding pattern characterization. [Bioinformatics. 2009]
Comparative study on ChIP-seq data: normalization and binding pattern characterization.
Taslim C, Wu J, Yan P, Singer G, Parvin J, Huang T, Lin S, Huang K. Bioinformatics. 2009 Sep 15; 25(18):2334-40. Epub 2009 Jun 26.
Review Regulation by transcription factors in bacteria: beyond description. [FEMS Microbiol Rev. 2009]
Review Regulation by transcription factors in bacteria: beyond description.
Balleza E, López-Bojorquez LN, Martínez-Antonio A, Resendis-Antonio O, Lozada-Chávez I, Balderas-Martínez YI, Encarnación S, Collado-Vides J. FEMS Microbiol Rev. 2009 Jan; 33(1):133-51.

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Molecular biology. Site-seeing by sequencing.
Molecular biology. Site-seeing by sequencing.
Science. 2007 Jun 8 ;316(5830):1441-2.

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Parallels between cytokinesis and retroviral budding: a role for the ESCRT machi...
Parallels between cytokinesis and retroviral budding: a role for the ESCRT machinery.
Science. 2007 Jun 29 ;316(5833):1908-12. Epub 2007 Jun 7 .

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Biological response modifier therapy for refractory childhood uveitis.
Biological response modifier therapy for refractory childhood uveitis.
Br J Ophthalmol. 2007 Oct ;91(10):1341-4. Epub 2007 Jun 7 .

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Peer functioning in children with ADHD.
Peer functioning in children with ADHD.
J Pediatr Psychol. 2007 Jul ;32(6):655-63. Epub 2007 Jun 7 .

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Update on Anti-Saccharomyces cerevisiae antibodies, anti-nuclear associated anti...
Update on Anti-Saccharomyces cerevisiae antibodies, anti-nuclear associated anti-neutrophil antibodies and antibodies to exocrine pancreas detected by indirect immunofluorescence as biomarkers in chronic inflammatory bowel diseases: results of a multicenter study.
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