The MiSink Plugin: Cytoscape as a graphical interf...[Bioinformatics. 2007]

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1: Bioinformatics. 2007 Aug 15;23(16):2193-5. Epub 2007 Jun 6. Links

The MiSink Plugin: Cytoscape as a graphical interface to the Database of Interacting Proteins.

Salwinski L, Eisenberg D.

UCLA-DOE Institute for Genomics & Proteomics, Department of Chemistry, Howard Hughes Medical Institute, Box 951570, UCLA, Los Angeles, CA 90095, USA. lukasz@mbi.ucla.edu

The MiSink Plugin converts Cytoscape, an open-source bioinformatics platform for network visualization, to a graphical interface for the database of interacting proteins (DIP: http://dip.doe-mbi.ucla.edu). Seamless integration is possible by providing bi-directional communication between Cytoscape and any Web site supplying data in XML or tab-delimited format. Availability: MiSink is freely available for download at http://dip.doe-mbi.ucla.edu/Software.cgi.

PMID: 17553858 [PubMed - indexed for MEDLINE]

BioNetBuilder: automatic integration of biological networks. [Bioinformatics. 2007]
NetMatch: a Cytoscape plugin for searching biological networks. [Bioinformatics. 2007]
The tYNA platform for comparative interactomics: a web tool for managing, comparing and mining multiple networks. [Bioinformatics. 2006]
PROTEIOS: an open source proteomics initiative. [Bioinformatics. 2005]
INTEGRATOR: interactive graphical search of large protein interactomes over the Web. [BMC Bioinformatics. 2006]
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The MiSink Plugin: Cytoscape as a graphical interface to the Database of Interacting Proteins.

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