J Biomol Struct Dyn. 1991 Oct;9(2):399-410.

Improved chips for sequencing by hybridization.

Pevzner PA, Lysov YuP, Khrapko KR, Belyavsky AV, Florentiev VL, Mirzabekov AD.

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Institute of Genetics of Microorganisms, Moscow, USSR.

Abstract

The SHOM method (Sequencing by Hybridization with Oligonucleotide Matrix) developed in 1988 is a new approach to nucleic acid sequencing by hybridization to an oligonucleotide matrix composed of an array of immobilized oligonucleotides. The original matrix proposed for sequencing by SHOM had to contain at least 65,536 octanucleotides. The present work describes a new family of matrices, which allows one to reduce the number of synthesized oligonucleotides 5-15 times without essentially decreasing the resolving power of the method.

PMID:: 1741970; [PubMed - indexed for MEDLINE]

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[Optimal chips for megabase DNA sequencing]. [Mol Biol (Mosk). 1991]
[Optimal chips for megabase DNA sequencing].
Pevzner PA, Lysov IuP, Khrapko KR, Beliavskiĭ AV, Florent'ev VL, Mirzabekov AD. Mol Biol (Mosk). 1991 Mar-Apr; 25(2):552-62.
A method for DNA sequencing by hybridization with oligonucleotide matrix. [DNA Seq. 1991]
A method for DNA sequencing by hybridization with oligonucleotide matrix.
Khrapko KR, Lysov YuP, Khorlin AA, Ivanov IB, Yershov GM, Vasilenko SK, Florentiev VL, Mirzabekov AD. DNA Seq. 1991; 1(6):375-88.
DNA sequencing by hybridization to oligonucleotide matrix. Calculation of continuous stacking hybridization efficiency. [J Biomol Struct Dyn. 1994]
DNA sequencing by hybridization to oligonucleotide matrix. Calculation of continuous stacking hybridization efficiency.
Lysov YuP, Chernyi AA, Balaeff AA, Beattie KL, Mirzabekov AD. J Biomol Struct Dyn. 1994 Feb; 11(4):797-812.
Review DNA sequencing by hybridization--a megasequencing method and a diagnostic tool? [Trends Biotechnol. 1994]
Review DNA sequencing by hybridization--a megasequencing method and a diagnostic tool?
Mirzabekov AD. Trends Biotechnol. 1994 Jan; 12(1):27-32.
Review [Sequencing by oligonucleotide hybridization]. [Tanpakushitsu Kakusan Koso. 1993]
Review [Sequencing by oligonucleotide hybridization].
Suyama A. Tanpakushitsu Kakusan Koso. 1993 Feb; 38(3):647-57.

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Cited by 4 PubMed Central articles

DNA microarrays with stem-loop DNA probes: preparation and applications. [Nucleic Acids Res. 2001]
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Broude NE, Woodward K, Cavallo R, Cantor CR, Englert D. Nucleic Acids Res. 2001 Oct 1; 29(19):E92.
Enhanced DNA sequencing by hybridization. [Proc Natl Acad Sci U S A. 1994]
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Broude NE, Sano T, Smith CL, Cantor CR. Proc Natl Acad Sci U S A. 1994 Apr 12; 91(8):3072-6.
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Improved chips for sequencing by hybridization.

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