Anim Genet. 2007 Jun;38(3):311-4. Epub 2007 Apr 2.

Construction of a river buffalo (Bubalus bubalis) whole-genome radiation hybrid panel and preliminary RH mapping of chromosomes 3 and 10.

Amaral ME, Owens KE, Elliott JS, Fickey C, Schäffer AA, Agarwala R, Womack JE.

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Department Biologia, IBILCE, Unesp - São Paulo State University, São Jose Rio Preto, SP 15054-000, Brazil. eamaral@ibilce.unesp.br

Abstract

The buffalo (Bubalus bubalis) is a source of milk and meat, and also serves as a draft animal. In this study, a 5000-rad whole-genome radiation hybrid (RH) panel for river buffalo was constructed and used to build preliminary RH maps for BBU3 and BBU10 chromosomes. The preliminary maps contain 66 markers, including coding genes, cattle expressed sequence tags (ESTs) and microsatellite loci. The RH maps presented here are the starting point for mapping additional loci that will allow detailed comparative maps between buffalo, cattle and other species whose genomes may be mapped in the future. A large quantity of DNA has been prepared from the cell lines forming the river buffalo RH panel and will be made publicly available to the international community both for the study of chromosome evolution and for the improvement of traits important to the role of buffalo in animal agriculture.

PMID:: 17403053; [PubMed - indexed for MEDLINE]

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A first generation whole genome RH map of the river buffalo with comparison to domestic cattle. [BMC Genomics. 2008]
A first generation whole genome RH map of the river buffalo with comparison to domestic cattle.
Amaral ME, Grant JR, Riggs PK, Stafuzza NB, Filho EA, Goldammer T, Weikard R, Brunner RM, Kochan KJ, Greco AJ, et al. BMC Genomics. 2008 Dec 24; 9:631. Epub 2008 Dec 24.
Preliminary radiation hybrid map for river buffalo chromosome 6 and comparison to bovine chromosome 3. [Anim Genet. 2007]
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Review [Genome radiation hybrid mapping: summary and future directions]. [Genetika. 2002]
Review [Genome radiation hybrid mapping: summary and future directions].
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Cited by 3 PubMed Central articles

Review Water buffalo genome science comes of age. [Int J Biol Sci. 2010]
Review Water buffalo genome science comes of age.
Michelizzi VN, Dodson MV, Pan Z, Amaral ME, Michal JJ, McLean DJ, Womack JE, Jiang Z. Int J Biol Sci. 2010 Jun 17; 6(4):333-49. Epub 2010 Jun 17.
A first generation whole genome RH map of the river buffalo with comparison to domestic cattle. [BMC Genomics. 2008]
A first generation whole genome RH map of the river buffalo with comparison to domestic cattle.
Amaral ME, Grant JR, Riggs PK, Stafuzza NB, Filho EA, Goldammer T, Weikard R, Brunner RM, Kochan KJ, Greco AJ, et al. BMC Genomics. 2008 Dec 24; 9:631. Epub 2008 Dec 24.
Application of dissociation curve analysis to radiation hybrid panel marker scoring: generation of a map of river buffalo (B. bubalis) chromosome 20. [BMC Genomics. 2008]
Application of dissociation curve analysis to radiation hybrid panel marker scoring: generation of a map of river buffalo (B. bubalis) chromosome 20.
Kochan KJ, Amaral ME, Agarwala R, Schäffer AA, Riggs PK. BMC Genomics. 2008 Nov 17; 9:544. Epub 2008 Nov 17.

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