Display Settings:

Format

Send to:

Choose Destination
See comment in PubMed Commons below
Neoplasia. 2007 Feb;9(2):166-80.

Oncomine 3.0: genes, pathways, and networks in a collection of 18,000 cancer gene expression profiles.

Author information

  • 1Department of Pathology, University of Michigan Medical School, Ann Arbor, MI 48109-0940, USA.

Abstract

DNA microarrays have been widely applied to cancer transcriptome analysis; however, the majority of such data are not easily accessible or comparable. Furthermore, several important analytic approaches have been applied to microarray analysis; however, their application is often limited. To overcome these limitations, we have developed Oncomine, a bioinformatics initiative aimed at collecting, standardizing, analyzing, and delivering cancer transcriptome data to the biomedical research community. Our analysis has identified the genes, pathways, and networks deregulated across 18,000 cancer gene expression microarrays, spanning the majority of cancer types and subtypes. Here, we provide an update on the initiative, describe the database and analysis modules, and highlight several notable observations. Results from this comprehensive analysis are available at http://www.oncomine.org.

PMID:
17356713
[PubMed - indexed for MEDLINE]
PMCID:
PMC1813932
Free PMC Article

Images from this publication.See all images (8)Free text

Figure 1
Figure 2
Figure 3
Figure 4
Figure 5
Figure 6
Figure 7
Figure 8
PubMed Commons home

PubMed Commons

0 comments
How to join PubMed Commons

    Supplemental Content

    Full text links

    Icon for PubMed Central
    Loading ...
    Write to the Help Desk