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Bioinformatics. 2007 Apr 1;23(7):910-2. Epub 2007 Feb 3.

NetMatch: a Cytoscape plugin for searching biological networks.

Author information

  • 1Dipartimento di Matematica e Informatica, Universit√† di Catania, Viale A. Doria 6, I-95125 Catania, Italy. ferro@dmi.unict.it

Abstract

NetMatch is a Cytoscape plugin which allows searching biological networks for subcomponents matching a given query. Queries may be approximate in the sense that certain parts of the subgraph-query may be left unspecified. To make the query creation process easy, a drawing tool is provided. Cytoscape is a bioinformatics software platform for the visualization and analysis of biological networks.

AVAILABILITY:

The full package, a tutorial and associated examples are available at the following web sites: http://alpha.dmi.unict.it/~ctnyu/netmatch.html, http://baderlab.org/Software/NetMatch.

PMID:
17277332
[PubMed - indexed for MEDLINE]
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