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FIVA: Functional Information Viewer and Analyzer extracting biological knowledge from transcriptome data of prokaryotes.
Molecular Genetics, Groningen Biomolecular Sciences, University of Groningen, Groningen, The Netherlands.
FIVA (Function Information Viewer and Analyzer) aids researchers in the prokaryotic community to quickly identify relevant biological processes following transcriptome analysis. Our software assists in functional profiling of large sets of genes and generates a comprehensive overview of affected biological processes. AVAILABILITY: http://bioinformatics.biol.rug.nl/standalone/fiva/
PMID: 17237043 [PubMed - indexed for MEDLINE]
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Cited by 7 PubMed Central articles
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DISCLOSE : DISsection of CLusters Obtained by SEries of transcriptome data using functional annotations and putative transcription factor binding sites.
Blom EJ, van Hijum SA, Hofstede KJ, Silvis R, Roerdink JB, Kuipers OP.
BMC Bioinformatics. 2008 Dec 16; 9:535. Epub 2008 Dec 16.
[BMC Bioinformatics. 2008]
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Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists.
Huang da W, Sherman BT, Lempicki RA.
Nucleic Acids Res. 2009 Jan; 37(1):1-13. Epub 2008 Nov 25.
[Nucleic Acids Res. 2009]
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Gene set analyses for interpreting microarray experiments on prokaryotic organisms.
Tintle NL, Best AA, DeJongh M, Van Bruggen D, Heffron F, Porwollik S, Taylor RC.
BMC Bioinformatics. 2008 Nov 5; 9:469. Epub 2008 Nov 5.
[BMC Bioinformatics. 2008]
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