Bioinformatics. 2007 Mar 15;23(6):764-6. Epub 2007 Jan 17.

TreeQ-VISTA: an interactive tree visualization tool with functional annotation query capabilities.

Gu S, Anderson I, Kunin V, Cipriano M, Minovitsky S, Weber G, Amenta N, Hamann B, Dubchak I.

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Institute for Data Analysis and Visualization (IDAV), Department of Computer Science, University of California, Davis, One Shields Ave., Davis, CA 95616, USA.

Abstract

We describe a general multiplatform exploratory tool called TreeQ-Vista, designed for presenting functional annotations in a phylogenetic context. Traits, such as phenotypic and genomic properties, are interactively queried from a user-provided relational database with a user-friendly interface which provides a set of tools for users with or without SQL knowledge. The query results are projected onto a phylogenetic tree and can be displayed in multiple color groups. A rich set of browsing, grouping and query tools are provided to facilitate trait exploration, comparison and analysis. AVAILABILITY: The program, detailed tutorial and examples are available online (http:/genome.lbl.gov/vista/TreeQVista).

PMID:: 17234642; [PubMed - indexed for MEDLINE]

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