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Bioinformatics. 2007 Mar 15;23(6):771-3. Epub 2007 Jan 17.

CoCo: a web application to display, store and curate ChIP-on-chip data integrated with diverse types of gene expression data.

Author information

  • 1European Molecular Biology Laboratory, D-69117 Heidelberg, Germany. charles.girardot@embl.de

Abstract

MOTIVATION:

CoCo, ChIP-on-Chip online, is an open-source web application that supports the annotation and curation of regulatory regions and associated target genes discovered in ChIP-on-chip experiments. CoCo integrates ChIP-on-chip results with diverse types of gene expression data (expression profiling, in situ hybridization) and displays them within a genomic context. Regulatory relationships between the transcription factor-bound regions and putative target genes can be stored and expanded throughout different sessions.

AVAILABILITY:

http://furlonglab.embl.de/methods/tools/coco.

PMID:
17234641
[PubMed - indexed for MEDLINE]
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