Beta strand peptidomimetics as potent PDZ domain ligands

Chem Biol. 2006 Dec;13(12):1247-51. doi: 10.1016/j.chembiol.2006.11.010.

Abstract

The search for general strategies for inhibiting protein-protein interactions has been stimulated by recognition of the key role they play in virtually every process of living systems. Multiprotein complex assembly and localization by PDZ domain-containing proteins exemplify processes critical to cell physiology and function that are mediated by beta strand association. Here we describe the development of substituted "@-tides," protease-resistant peptidomimetics incorporating conformationally restricted amino acid surrogates that reproduce the hydrogen-bonding pattern and side-chain functionality of a beta strand. The synthetic flexibility and generality of the substituted @-tide design was demonstrated by the synthesis of a panel of ligands for the alpha1-syntrophin PDZ domain. The rational design of a small molecule of unprecedented affinity for the PDZ domain suggests that these peptidomimetics may provide a general method for inhibiting protein-protein interactions involving extended peptide chains.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biomimetics
  • Calcium-Binding Proteins / chemistry
  • Calcium-Binding Proteins / metabolism
  • Ligands*
  • Membrane Proteins / chemistry
  • Membrane Proteins / metabolism
  • Models, Molecular
  • Molecular Structure
  • Muscle Proteins / chemistry
  • Muscle Proteins / metabolism
  • Protein Binding
  • Protein Structure, Tertiary / physiology

Substances

  • Calcium-Binding Proteins
  • Ligands
  • Membrane Proteins
  • Muscle Proteins
  • syntrophin alpha1