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1: Genome Biol. 2006;7(11):R111. Links

xGDB: open-source computational infrastructure for the integrated evaluation and analysis of genome features.

Schlueter SD, Wilkerson MD, Dong Q, Brendel V.

Department of Genetics, Development, and Cell Biology, Iowa State University, Ames, Iowa 50011-3260, USA.

The eXtensible Genome Data Broker (xGDB) provides a software infrastructure consisting of integrated tools for the storage, display, and analysis of genome features in their genomic context. Common features include gene structure annotations, spliced alignments, mapping of repetitive sequence, and microarray probes, but the software supports inclusion of any property that can be associated with a genomic location. The xGDB distribution and user support utilities are available online at the xGDB project website, http://xgdb.sourceforge.net/.

PMID: 17116260 [PubMed - indexed for MEDLINE]

PMCID: PMC1794590

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Cited by 3 PubMed Central articles

PlantGDB: a resource for comparative plant genomics.
Duvick J, Fu A, Muppirala U, Sabharwal M, Wilkerson MD, Lawrence CJ, Lushbough C, Brendel V. Nucleic Acids Res. 2008 Jan; 36(Database issue):D959-65. Epub 2007 Dec 6.

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