Phylogenetic relationships of the HA (A) and PB2 (B) genes of representative influenza A viruses isolated in Asia. Trees were generated by the neighbor-joining method in the PAUP* program (27) (Bayesian analysis revealed the same relationships.) Numbers above and below branches indicate neighbor-joining bootstrap values and Bayesian posterior probabilities, respectively. Not all supports are shown because of space constraints. Analysis was based on nucleotides 1–1011 of the HA gene and 985-2233 of the PB2 gene. The HA and PB2 trees were rooted to A/tern/South Africa/61 and A/equine/Prague/1/56, respectively. Colors indicate viruses from the FJ-like (red), GY1 (blue), GY2 (green), YN2 (purple), and GD/06 (orange) sublineages. Recent human isolates from China are underlined. ∗, Viruses included in antigenic analysis (Fig. 2 and Table 4). JX, Jiangxi; MDK, migratory duck; MYS, Malaysia; Ph, pheasant; Qa, quail; SCK, silky chicken; VTM, Vietnam/Thailand/Malaysia. (Scale bar, 0.01 substitutions per site.)