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Genome Biol. 2006;7(10):R97. Epub 2006 Oct 25.

Unraveling transcriptional control and cis-regulatory codes using the software suite GeneACT.

Author information

  • 1Department of Chemistry and Biochemistry, University of Colorado, 215 UCB, Boulder, Colorado 80309, USA.

Abstract

Deciphering gene regulatory networks requires the systematic identification of functional cis-acting regulatory elements. We present a suite of web-based bioinformatics tools, called GeneACT http://promoter.colorado.edu, that can rapidly detect evolutionarily conserved transcription factor binding sites or microRNA target sites that are either unique or over-represented in differentially expressed genes from DNA microarray data. GeneACT provides graphic visualization and extraction of common regulatory sequence elements in the promoters and 3'-untranslated regions that are conserved across multiple mammalian species.

PMID:
17064417
[PubMed - indexed for MEDLINE]
PMCID:
PMC1794569
Free PMC Article

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