Bioinformatics. 2007 Jan 1;23(1):127-8. Epub 2006 Oct 18.

Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation.

Source

EMBL, Meyerhofstrasse 1, 69117 Heidelberg, Germany.

Abstract

Interactive Tree Of Life (iTOL) is a web-based tool for the display, manipulation and annotation of phylogenetic trees. Trees can be interactively pruned and re-rooted. Various types of data such as genome sizes or protein domain repertoires can be mapped onto the tree. Export to several bitmap and vector graphics formats is supported. AVAILABILITY: iTOL is available at http://itol.embl.de

PMID:: 17050570; [PubMed - indexed for MEDLINE]

Free full text

MeSH Terms

LinkOut - more resources

Full Text Sources

Supplemental Content

Related citations

Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. [Nucleic Acids Res. 2011]
Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy.
Letunic I, Bork P. Nucleic Acids Res. 2011 Jul; 39(Web Server issue):W475-8. Epub 2011 Apr 5.
PhyloWidget: web-based visualizations for the tree of life. [Bioinformatics. 2008]
PhyloWidget: web-based visualizations for the tree of life.
Jordan GE, Piel WH. Bioinformatics. 2008 Jul 15; 24(14):1641-2. Epub 2008 May 16.
TreeQ-VISTA: an interactive tree visualization tool with functional annotation query capabilities. [Bioinformatics. 2007]
TreeQ-VISTA: an interactive tree visualization tool with functional annotation query capabilities.
Gu S, Anderson I, Kunin V, Cipriano M, Minovitsky S, Weber G, Amenta N, Hamann B, Dubchak I. Bioinformatics. 2007 Mar 15; 23(6):764-6. Epub 2007 Jan 17.
Review VEGA, the genome browser with a difference. [Brief Bioinform. 2005]
Review VEGA, the genome browser with a difference.
Loveland J. Brief Bioinform. 2005 Jun; 6(2):189-93.
Review Genome mapping statistics and bioinformatics. [Methods Mol Biol. 2007]
Review Genome mapping statistics and bioinformatics.
Mychaleckyj JC. Methods Mol Biol. 2007; 404:461-88.

See reviews... See all...

Cited by over 100 PubMed Central articles

A dynamic view of domain-motif interactions. [PLoS Comput Biol. 2012]
A dynamic view of domain-motif interactions.
Akiva E, Friedlander G, Itzhaki Z, Margalit H. PLoS Comput Biol. 2012 Jan; 8(1):e1002341. Epub 2012 Jan 12.
LTR retrotransposons in fungi. [PLoS One. 2011]
LTR retrotransposons in fungi.
Muszewska A, Hoffman-Sommer M, Grynberg M. PLoS One. 2011; 6(12):e29425. Epub 2011 Dec 29.
The FGGY carbohydrate kinase family: insights into the evolution of functional specificities. [PLoS Comput Biol. 2011]
The FGGY carbohydrate kinase family: insights into the evolution of functional specificities.
Zhang Y, Zagnitko O, Rodionova I, Osterman A, Godzik A. PLoS Comput Biol. 2011 Dec; 7(12):e1002318. Epub 2011 Dec 22.

See all...

Related information

Related Citations
Calculated set of PubMed citations closely related to the selected article(s) retrieved using a word weight algorithm. Related articles are displayed in ranked order from most to least relevant, with the “linked from” citation displayed first.
Cited in PMC
Full-text articles in the PubMed Central Database that cite the current articles.

Recent activity

Clear Turn Off Turn On

Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display an...
Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation.
Bioinformatics. 2007 Jan 1 ;23(1):127-8. Epub 2006 Oct 18 .

PubMed
Survival of cancer cells is maintained by EGFR independent of its kinase activit...
Survival of cancer cells is maintained by EGFR independent of its kinase activity.
Cancer Cell. 2008 May ;13(5):385-93.

PubMed
Identification and characterization of a ouabain-like compound from human plasma...
Identification and characterization of a ouabain-like compound from human plasma.
Proc Natl Acad Sci U S A. 1991 Jul 15; 88(14): 6259-6263.

PMC
DNA uptake during bacterial transformation.
DNA uptake during bacterial transformation.
Nat Rev Microbiol. 2004 Mar ;2(3):241-9.

PubMed
Opposite relationships between cannabis use and neurocognitive functioning in bi...
Opposite relationships between cannabis use and neurocognitive functioning in bipolar disorder and schizophrenia.
Psychol Med. 2010 Aug ;40(8):1337-47. Epub 2009 Nov 6 .

PubMed

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

PubMed

Display Settings:

Send to:

Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation.

Source

Abstract

MeSH Terms

MeSH Terms

LinkOut - more resources

Full Text Sources

Supplemental Content

Related citations

Cited by over 100 PubMed Central articles

Related information

Recent activity

Simple NCBI Directory

Getting Started

Resources

Popular

Featured

NCBI Information