Bayesian estimation of species richness from quadrat sampling data in the presence of prior information

Biometrics. 2006 Sep;62(3):706-12. doi: 10.1111/j.1541-0420.2006.00524.x.

Abstract

We consider the problem of estimating the number of species of an animal community. It is assumed that it is possible to draw up a list of species liable to be present in this community. Data are collected from quadrat sampling. Models considered in this article separate the assumptions related to the experimental protocol and those related to the spatial distribution of species in the quadrats. Our parameterization enables us to incorporate prior information on the presence, detectability, and spatial density of species. Moreover, we elaborate procedures to build the prior distributions on these parameters from information furnished by external data. A simulation study is carried out to examine the influence of different priors on the performances of our estimator. We illustrate our approach by estimating the number of nesting bird species in a forest.

MeSH terms

  • Animals
  • Bayes Theorem*
  • Biometry / methods*
  • Birds
  • Ecosystem
  • France
  • Models, Biological
  • Models, Statistical
  • Species Specificity
  • Trees