Methods Enzymol. 2006;411:134-93.

TM4 microarray software suite.

Saeed AI, Bhagabati NK, Braisted JC, Liang W, Sharov V, Howe EA, Li J, Thiagarajan M, White JA, Quackenbush J.

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Department of Bioinformatics, The Institute for Genomic Research, Rockville, MD, USA.

Abstract

Powerful specialized software is essential for managing, quantifying, and ultimately deriving scientific insight from results of a microarray experiment. We have developed a suite of software applications, known as TM4, to support such gene expression studies. The suite consists of open-source tools for data management and reporting, image analysis, normalization and pipeline control, and data mining and visualization. An integrated MIAME-compliant MySQL database is included. This chapter describes each component of the suite and includes a sample analysis walk-through.

PMID:: 16939790; [PubMed - indexed for MEDLINE]

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TM4 microarray software suite.

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