EGASP: Introduction. [Genome Biol. 2006]

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1: Genome Biol. 2006;7 Suppl 1:S1.1-3. Epub 2006 Aug 7. Links

EGASP: Introduction.

Omicia Inc, Christie Ave, Emeryville, CA 94608, USA.

PMID: 16925831 [PubMed - indexed for MEDLINE]

PMCID: PMC1810546

ReviewEGASP: the human ENCODE Genome Annotation Assessment Project.
Genome Biol. 2006; 7 Suppl 1:S2.1-31. Epub 2006 Aug 7.

[Genome Biol. 2006]
GENCODE: producing a reference annotation for ENCODE.
Genome Biol. 2006; 7 Suppl 1:S4.1-9. Epub 2006 Aug 7.

[Genome Biol. 2006]
ReviewPerformance assessment of promoter predictions on ENCODE regions in the EGASP experiment.
Genome Biol. 2006; 7 Suppl 1:S3.1-13. Epub 2006 Aug 7.

[Genome Biol. 2006]
ReviewNew metrics for comparative genomics.
Curr Opin Biotechnol. 2006 Oct; 17(5):440-7. Epub 2006 Sep 15.

[Curr Opin Biotechnol. 2006]
Exogean: a framework for annotating protein-coding genes in eukaryotic genomic DNA.
Genome Biol. 2006; 7 Suppl 1:S7.1-10. Epub 2006 Aug 7.

[Genome Biol. 2006]
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Quantitative measures for the management and comparison of annotated genomes.
Eilbeck K, Moore B, Holt C, Yandell M. BMC Bioinformatics. 2009 Feb 23; 10:67. Epub 2009 Feb 23.

[BMC Bioinformatics. 2009]
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments.
Haas BJ, Salzberg SL, Zhu W, Pertea M, Allen JE, Orvis J, White O, Buell CR, Wortman JR. Genome Biol. 2008 Jan 11; 9(1):R7. Epub 2008 Jan 11.

[Genome Biol. 2008]
Determining promoter location based on DNA structure first-principles calculations.
Goñi JR, Pérez A, Torrents D, Orozco M. Genome Biol. 2007; 8(12):R263.

[Genome Biol. 2007]
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