Splicing bioinformatics to biology. [Genome Biol. 2006] - PubMed

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A systematic analysis of intronic sequences downstream of 5' splice sites reveals a widespread role for U-rich motifs and TIA1/TIAL1 proteins in alternative splicing regulation. [Genome Res. 2008]
A systematic analysis of intronic sequences downstream of 5' splice sites reveals a widespread role for U-rich motifs and TIA1/TIAL1 proteins in alternative splicing regulation.
Aznarez I, Barash Y, Shai O, He D, Zielenski J, Tsui LC, Parkinson J, Frey BJ, Rommens JM, Blencowe BJ. Genome Res. 2008 Aug; 18(8):1247-58. Epub 2008 May 2.
Overlapping splicing regulatory motifs--combinatorial effects on splicing. [Nucleic Acids Res. 2010]
Overlapping splicing regulatory motifs--combinatorial effects on splicing.
Goren A, Kim E, Amit M, Vaknin K, Kfir N, Ram O, Ast G. Nucleic Acids Res. 2010 Jun; 38(10):3318-27. Epub 2010 Jan 27.
ASD: the Alternative Splicing Database. [Nucleic Acids Res. 2004]
ASD: the Alternative Splicing Database.
Thanaraj TA, Stamm S, Clark F, Riethoven JJ, Le Texier V, Muilu J. Nucleic Acids Res. 2004 Jan 1; 32(Database issue):D64-9.
Review Protein diversity from alternative splicing: a challenge for bioinformatics and post-genome biology. [Cell. 2000]
Review Protein diversity from alternative splicing: a challenge for bioinformatics and post-genome biology.
Black DL. Cell. 2000 Oct 27; 103(3):367-70.
Review Bioinformatics analysis of alternative splicing. [Brief Bioinform. 2005]
Review Bioinformatics analysis of alternative splicing.
Lee C, Wang Q. Brief Bioinform. 2005 Mar; 6(1):23-33.

See reviews... See all...

Cited by 3 PubMed Central articles

Genome-wide mapping of alternative splicing in Arabidopsis thaliana. [Genome Res. 2010]
Genome-wide mapping of alternative splicing in Arabidopsis thaliana.
Filichkin SA, Priest HD, Givan SA, Shen R, Bryant DW, Fox SE, Wong WK, Mockler TC. Genome Res. 2010 Jan; 20(1):45-58. Epub 2009 Oct 26.
Dynamic regulation of alternative splicing by silencers that modulate 5' splice site competition. [Cell. 2008]
Dynamic regulation of alternative splicing by silencers that modulate 5' splice site competition.
Yu Y, Maroney PA, Denker JA, Zhang XH, Dybkov O, Lührmann R, Jankowsky E, Chasin LA, Nilsen TW. Cell. 2008 Dec 26; 135(7):1224-36.
Heritability of alternative splicing in the human genome. [Genome Res. 2007]
Heritability of alternative splicing in the human genome.
Kwan T, Benovoy D, Dias C, Gurd S, Serre D, Zuzan H, Clark TA, Schweitzer A, Staples MK, Wang H, et al. Genome Res. 2007 Aug; 17(8):1210-8.

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