Practical strategies for discovering regulatory DN...[PLoS Comput Biol. 2006]

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1: PLoS Comput Biol. 2006 Apr;2(4):e36. Links

Practical strategies for discovering regulatory DNA sequence motifs.

Department of Electrical Engineering and Computer Science, Cambridge, Massachusetts, United States of America.

PMID: 16683017 [PubMed - indexed for MEDLINE]

PMCID: PMC1447654

Systematic identification of mammalian regulatory motifs' target genes and functions.
Nat Methods. 2008 Apr; 5(4):347-53. Epub 2008 Mar 2.

[Nat Methods. 2008]
Finding weak motifs in DNA sequences.
Pac Symp Biocomput. 2002; :235-46.

[Pac Symp Biocomput. 2002]
Guiding revision of regulatory models with expression data.
Pac Symp Biocomput. 2002; :486-97.

[Pac Symp Biocomput. 2002]
ReviewParsing regulatory DNA: general tasks, techniques, and the PhyloGibbs approach.
J Biosci. 2007 Aug; 32(5):863-70.

[J Biosci. 2007]
ReviewDiscovering sequence motifs.
Methods Mol Biol. 2008; 452:231-51.

[Methods Mol Biol. 2008]
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c-REDUCE: incorporating sequence conservation to detect motifs that correlate with expression.
Kechris K, Li H. BMC Bioinformatics. 2008 Nov 28; 9:506. Epub 2008 Nov 28.

[BMC Bioinformatics. 2008]
Identification of motifs that function in the splicing of non-canonical introns.
Murray JI, Voelker RB, Henscheid KL, Warf MB, Berglund JA. Genome Biol. 2008; 9(6):R97. Epub 2008 Jun 12.

[Genome Biol. 2008]
A novel Bayesian DNA motif comparison method for clustering and retrieval.
Habib N, Kaplan T, Margalit H, Friedman N. PLoS Comput Biol. 2008 Feb 29; 4(2):e1000010. Epub 2008 Feb 29.

[PLoS Comput Biol. 2008]
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