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    Structure. 2006 Feb;14(2):247-55.

    Antiparallel four-stranded coiled coil specified by a 3-3-1 hydrophobic heptad repeat.

    Deng Y, Liu J, Zheng Q, Eliezer D, Kallenbach NR, Lu M.

    Department of Biochemistry, Weill Medical College of Cornell University, New York, New York 10021, USA.

    Coiled-coil sequences in proteins commonly share a seven-amino acid repeat with nonpolar side chains at the first (a) and fourth (d) positions. We investigate here the role of a 3-3-1 hydrophobic repeat containing nonpolar amino acids at the a, d, and g positions in determining the structures of coiled coils using mutants of the GCN4 leucine zipper dimerization domain. When three charged residues at the g positions in the parental sequence are replaced by nonpolar alanine or valine side chains, stable four-helix structures result. The X-ray crystal structures of the tetramers reveal antiparallel, four-stranded coiled coils in which the a, d, and g side chains interlock in a combination of knobs-into-knobs and knobs-into-holes packing. Interfacial interactions in a coiled coil can therefore be prescribed by hydrophobic-polar patterns beyond the canonical 3-4 heptad repeat. The results suggest that the conserved, charged residues at the g positions in the GCN4 leucine zipper can impart a negative design element to disfavor thermodynamically more stable, antiparallel tetramers.

    PMID: 16472744 [PubMed - indexed for MEDLINE]

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    Structures reported by this article