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Genome Biol. 2005;6(9):R80. Epub 2005 Aug 16.

PubNet: a flexible system for visualizing literature derived networks.

Author information

  • 1Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, USA. sdouglas@fas.harvard.edu

Abstract

We have developed PubNet, a web-based tool that extracts several types of relationships returned by PubMed queries and maps them into networks, allowing for graphical visualization, textual navigation, and topological analysis. PubNet supports the creation of complex networks derived from the contents of individual citations, such as genes, proteins, Protein Data Bank (PDB) IDs, Medical Subject Headings (MeSH) terms, and authors. This feature allows one to, for example, examine a literature derived network of genes based on functional similarity.

PMID:
16168087
[PubMed - indexed for MEDLINE]
PMCID:
PMC1242215
Free PMC Article

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