Fis1 is associated with highly purified peroxisomes and is induced during peroxisome proliferation. (A) Highly purified peroxisomes were isolated from rat liver. Distribution of peroxisomal and mitochondrial marker enzyme activities after OptiPrep gradient centrifugation of a crude peroxisomal fraction. Relative concentration = (U ×∑ΔV) (∑U ×ΔV)–1. ΔV represents the volume of a single fraction, U its corresponding enzyme activity, ∑ΔV the total gradient volume, and ∑U the total units recovered from all gradient fractions. CAT, catalase; CytcOx, cytochrome c oxidase. (B) Left, localization of Fis1 in the peroxisomal (Po) and mitochondrial (Mit) fractions. Equal amounts of protein (5 μg/lane) from a single preparation were run on 12.5% acrylamide gels, blotted onto nitrocellulose membranes, and incubated with antibodies to hFis1, PMP70, porin, and ATP synthase α (ATPsyn). In the mitochondrial fraction, an additional band of ∼45 kDa was detected with the hFis1 antibody when higher amounts of protein were applied (20 μg/lane) (immunoblot obtained with another organelle preparation tested negative for mitochondrial contamination). Right, highly purified peroxisomes were separated into a matrix (Ma) and a membrane fraction (Mb). Proteins (PMP70, CAT, 4 μg/lane; hFis1, ATPsyn, porin, 10 μg/lane) were immunoblotted using antibodies to PMP70, catalase (CAT), hFis1, porin, or ATP synthase α. (C) Highly purified peroxisomes from controls (–) (Co) and rats treated with the peroxisome proliferator bezafibrate (+) (Beza) were isolated and immunoblotted using antibodies to peroxisomal acyl-CoA oxidase (AOX), catalase (CAT) or hFis1. Amounts of protein loaded onto the gel: AOX, CAT, 3 μg/lane; hFis1, 6 μg/lane. For hFis1, immunoblots loaded with different amounts of protein (5–35 μg/lane) were quantitated and are expressed as means ± SD. The positions of molecular mass markers (in kilodaltons) are indicated on the right. For acyl-CoA oxidase, only the B subunit (52 kDa) is shown.