A newly identified HLA-C allele: Cw*1210, and confirmation of HLA-Cw*080102

Tissue Antigens. 2005 Jul;66(1):61-3. doi: 10.1111/j.1399-0039.2005.00414.x.

Abstract

HLA-Cw*1210 and -Cw*080102 were identified in Taiwan populations using reverse-line SSO typing method. Sequencing showed that HLA-Cw*1210 and -Cw*120201/02 were identical at exon 2 but differed at exon 3 with three nucleotide substitutions at codons 99 and 105 and an amino acid change from tyrosine to phenylalanine at codon 99. Also, allele HLA-Cw*080102 differed from HLA-Cw*080101 in exon 3 by a single synonymous nucleotide transition at codon 99. HLA-Cw*080102 was found only in the Puyuma indigenous tribe of Taiwan and had a frequency of 5%. Interestingly, nucleotide substitutions of HLA-Cw*1210 and -Cw*080102 were located in a noticeably heterogeneous region of the 5' end of exon 3, where similar substitution motifs are frequently found in other HLA-C alleles, therefore suggesting preferential gene conversion in this region.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alleles
  • Base Sequence
  • Codon
  • Exons
  • HLA-C Antigens / genetics*
  • Humans
  • Molecular Sequence Data
  • Phenylalanine / chemistry
  • Sequence Analysis, DNA
  • Taiwan
  • Tyrosine / chemistry

Substances

  • Codon
  • HLA-C Antigens
  • HLA-C*08:01:02 antigen
  • HLA-C*12:10 antigen
  • Tyrosine
  • Phenylalanine

Associated data

  • GENBANK/AF510721
  • GENBANK/AY323834