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Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W669-72.

TargetIdentifier: a webserver for identifying full-length cDNAs from EST sequences.

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  • 1Centre for Structural and Functional Genomics, Concordia University, Montreal, Quebec H4B 1R6, Canada. jack@gene.concordia.ca


TargetIdentifier is a webserver that identifies full-length cDNA sequences from the expressed sequence tag (EST)-derived contig and singleton data. To accomplish this TargetIdentifier uses BLASTX alignments as a guide to locate protein coding regions and potential start and stop codons. This information is then used to determine whether the EST-derived sequences include their translation start codons. The algorithm also uses the BLASTX output to assign putative functions to the query sequences. The server is available at https://fungalgenome.concordia.ca/tools/TargetIdentifier.html.

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