GLYK Represents a Novel Kinase Family Phylogenetically Distinct from Other GK Proteins.
The neighbor-joining tree was constructed from a ClustalX (Thompson et al., 1997) alignment of GLYK, GK, and PRK amino acid sequences with the program TREECON 1.3b (Van de Peer and De Wachter, 1994) using a Poisson correction for the calculation of the distance matrix. Bootstrap analysis with 1000 replicates (results shown as percentage values) confirmed the tree topology at all nodes and the differentiation into four unrelated classes. Sequences used for calculations are as follows: E. coli GK1 (E. coli glxK, P77364), E. coli GK2 (E. coli garK, P23524), E. coli GK3 (E. coli gcxK putative GK, AAL61903), Erwinia GK (E. carotovora garK, CAG76470), Klebsiella GK (K. pneumoniae glxK, BAD14998), Synechocystis GK (Synechocystis sp PCC 6803 hypothetical protein, P73408), mouse GK (Mus musculus transcript, AAH25834), human GK (Homo sapiens GLYCTK1, AAP41923), Silicibacter GK (Silicibacter sp TM 1040 putative GK, ZP_00336015), Desulfovibrio GK (D. desulfuricans putative GK, ZP00129227), Thermotoga GK (T. maritima putative GK, AAD36652), Anabaena GLYK (A. variabilis predicted kinase, ZP_00161317), Nostoc GLYK (Nostoc sp PCC 7120 hypothetical protein, NP_486913), S. cerevisiae GLYK (S. cerevisiae ATP binding protein, NP011721), S. pombe GLYK (S. pombe ATP binding protein, P78883), rice GLYK (Oryza sativa PRK/UK-like protein, BAD73764, Os01g48990), Arabidopsis GLYK (At1g80380, this article), Synechocystis PRK (Synechocystis sp PCC 6803 PRK, AAA27293), Anabaena PRK (A. variabilis PRK/UK, AD2321), Arabidopsis PRK (P25697), and Chlamydomonas PRK (C. reinhardtii PRK, P19824).