(A) Sequence context for eleven independent dC deaminations on the minus strand of Ty1 cDNA. The fraction of events (expressed as a percentage) in which a particular base (A, C, G, or T) was found at the −2, −1, or +1 position relative to the deaminated C residue is indicated.
(B) Top, PCR analysis of genomic DNA from a wild-type (WT) strain expressing no APOBEC protein (−) or the APOBEC3 protein indicated, or from a tec1Δ strain lacking APOBEC, with one primer that hybridizes in the Ty1 pol domain (T) and one that hybridizes to 16 tRNAgly genes (S). PCR reactions were terminated after 29, 31, 33, or 35 cycles (black triangles). Control PCR reactions contained one primer (T or S). Bottom, PCR reactions of the TEL1 gene terminated after 17, 19, 21, or 23 cycles, as a control for equivalent template concentrations.