Expression of individual genes related to the fermentative and respiratory pathways. Gene expression profiles in Figures 4, 5, 6 are from the second batch culture. Data are uncentered and relative to the expression of the chemostat (D = 0.25) reference culture. Data for the low dilution rate (D = 0.5) chemostat are shown, when available, in the column marked with an asterisk (*). (A) Genes involved in the direction of carbon flux toward fermentation are coordinately expressed over the course of the diauxic shift. (B) Genes involved in the TCA and glyoxylate cycles become highly expressed after glucose depletion. Genes shown are FUM1, SDH1-4, MDH1, MDH3, CIT1-2, ACO1, KGD1-2, LPD1, and IDH1-2. For clarity, only the genes showing most (CIT2) and least extreme changes (LPD1) are labeled. (C) Inferred effect of gene expression changes is to direct carbon metabolic flux from the fermentative into the respiratory pathway. Qualitative changes in gene expression are given by the color of the gene labels (red for increase and green for decrease) and by the thickness of the line describing the step in the pathway.