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J Proteome Res. 2004 Nov-Dec;3(6):1234-42.

Open source system for analyzing, validating, and storing protein identification data.

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  • 1Beavis Informatics Ltd., and Manitoba Center for Proteomics, Winnipeg, Manitoba, Canada.

Abstract

This paper describes an open-source system for analyzing, storing, and validating proteomics information derived from tandem mass spectrometry. It is based on a combination of data analysis servers, a user interface, and a relational database. The database was designed to store the minimum amount of information necessary to search and retrieve data obtained from the publicly available data analysis servers. Collectively, this system was referred to as the Global Proteome Machine (GPM). The components of the system have been made available as open source development projects. A publicly available system has been established, comprised of a group of data analysis servers and one main database server.

PMID:
15595733
[PubMed - indexed for MEDLINE]
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