Isolation of E. coli and F. tularensis shuttle plasmid pFNLTP1 and additional deletion derivatives of pTOPO/FNL10. (A) Plasmid maps of pTOPO/FNL10 and the derivative pFNLTP1 isolated from F. tularensis LVS due to spontaneous deletion of pTOPO/FNL10. The KpnI (K), SacI (S), and BamHI (B) sites are unique restriction enzyme sites on the plasmids. Additional restriction sites on the maps include SphI (Sp) and BglII (Bg) sites. The genes or origins from pCR2.1-TOPO are indicated by light gray arrows and boxes, while those from pFNL10 are indicated by dark gray arrows. The β-lactamase gene (bla) encodes ampicillin resistance, while the neomycin phosphotransferase gene (npt) encodes kanamycin resistance. The deletion in pFNLTP1 is indicated by the striped box; orfm, orf4, a portion of orf5 (136 to 255 bp of the coding sequence), and a portion of f1 ori (1 to 99 bp) are included in the deletion. (B) Restriction enzyme digestion of pTOPO/FNL10 (lanes 1 and 3) and pFNLTP1 (lanes 2 and 4) with either SphI (lanes 1 and 2) or BglII (lanes 3 and 4). The sizes of the DNA markers (in kilobases) are indicated on the left. (C) Additional spontaneous deletion derivatives pFNLTP2, pFNLTP3, and pFNLTP4 obtained following electroporation of pTOPO/FNL10 into F. tularensis LVS. Regions deleted from the plasmids are indicated by the striped boxes. Note that the deletions in all the derivatives encompass orf4 and orfm from pFNL10 and fl ori from pCR2.1-TOPO; the pFNLTP2 deletion includes orfm, orf4, fl ori, and a portion of orf5 (76 to 255 bp of the coding sequence), the pFNLTP3 deletion includes orfm, fl ori, and a portion of orf4 (169 to 204 bp of the coding sequence), and the pFNLTP4 deletion includes orfm, orf4, a portion of orf5 (238 to 255 bp of the coding sequence), and a portion of fl ori (1 to 288 bp).