What is a hidden Markov model? [Nat Biotechnol. 2004] - PubMed

Review An introduction to hidden Markov models. [Curr Protoc Bioinformatics. 2007]
Review An introduction to hidden Markov models.
Schuster-Böckler B, Bateman A. Curr Protoc Bioinformatics. 2007 Jun; Appendix 3:Appendix 3A.
HMMoC--a compiler for hidden Markov models. [Bioinformatics. 2007]
HMMoC--a compiler for hidden Markov models.
Lunter G. Bioinformatics. 2007 Sep 15; 23(18):2485-7. Epub 2007 Jul 10.
Computation of mutual information from Hidden Markov Models. [Comput Biol Chem. 2010]
Computation of mutual information from Hidden Markov Models.
Reker D, Katzenbeisser S, Hamacher K. Comput Biol Chem. 2010 Dec; 34(5-6):328-33. Epub 2010 Sep 22.
A tutorial of techniques for improving standard Hidden Markov Model algorithms. [J Bioinform Comput Biol. 2009]
A tutorial of techniques for improving standard Hidden Markov Model algorithms.
Golod D, Brown DG. J Bioinform Comput Biol. 2009 Aug; 7(4):737-54.
Review Hidden Markov Models, grammars, and biology: a tutorial. [J Bioinform Comput Biol. 2005]
Review Hidden Markov Models, grammars, and biology: a tutorial.
Mukherjee S, Mitra S. J Bioinform Comput Biol. 2005 Apr; 3(2):491-526.

Temporal expression of bacterial proteins instructs host CD4 T cell expansion and th17 development. [PLoS Pathog. 2012]
Temporal expression of bacterial proteins instructs host CD4 T cell expansion and th17 development.
Lee SJ, McLachlan JB, Kurtz JR, Fan D, Winter SE, Baumler AJ, Jenkins MK, McSorley SJ. PLoS Pathog. 2012 Jan; 8(1):e1002499. Epub 2012 Jan 19.
Not all transmembrane helices are born equal: Towards the extension of the sequence homology concept to membrane proteins. [Biol Direct. 2011]
Not all transmembrane helices are born equal: Towards the extension of the sequence homology concept to membrane proteins.
Wong WC, Maurer-Stroh S, Eisenhaber F. Biol Direct. 2011 Oct 25; 6:57. Epub 2011 Oct 25.
Comparing binding site information to binding affinity reveals that Crp/DNA complexes have several distinct binding conformers. [Nucleic Acids Res. 2011]
Comparing binding site information to binding affinity reveals that Crp/DNA complexes have several distinct binding conformers.
Holmquist PC, Holmquist GP, Summers ML. Nucleic Acids Res. 2011 Aug; 39(15):6813-24. Epub 2011 May 17.

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