Computer-generated space-filling model of TcpA (toxin-coregulated pilus protein A) 15 and its location on TCP. The RasMol version 2.7.2.1 software was used to display and manipulate the Brookhaven Protein Data Bank files 1OQV (TcpA, panel A) and 1OR9 (TCP model, panels B to D) (3). (A) TcpA 15 comprises amino acids 170 to 183. TcpA 15 contains four (K172, D175, H181, and E183) of the six interactive amino acids (K172, D175, H181, E183, K184, and K187) previously identified as being important for TCP function. The TcpA residues (N173, L174, L176 [cyan], I179, H181, and V182) that do not vary between biotypes or colonizing-competent environmental isolates of V. cholerae are colored red. Eight of the 14 residues that comprised TcpA 15, A170, S171, K172, D175 (yellow amino acid), T177, N178, T180, and E183 (orange amino acids), vary between naturally occurring, functional TcpA alleles. Residue L176 is involved with Y51 in a hydrogen bond interaction. (B) The primary amino acid sequence of TcpA peptides (11 to 18) used to immunize rabbits are shown in the one-letter code and color coded for the individual TcpA peptides which are displayed on the TCP fiber model. Lysine residues are underlined. A TCP fiber model has been proposed (3). TcpA 15 is red and is partially exposed, nested between other TcpA peptides, all of which are displayed in a repeating pattern on the surface of the TCP fiber. (C) Residues 30 to 199 of selected chains (C, B, E, H, G. J, M, and L) of the TCP model were restricted (displayed without N termini) with the RasMol program and displayed. This TCP representation shows that D175 (yellow) is exposed and available for antibody binding. There is a recessed “pocket,” 30 by 20 Å, where TcpA 15 is located within the quaternary structure of TCP. Orange residues represent amino acids that can vary in TcpA 15, while red residues are conserved. Leucine 176 is cyan, and Y51 is blue. Residues 50 to 70 (pink, except 51) represent the sequence area in the α/β loop that bind the D region on an adjacent monomer. (D) Enlarged area showing the face of TcpA on adjacent monomers that are proposed to interact. The color scheme for the amino acids is as above.